| export CUDA_VISIBLE_DEVICES=0 | |
| python -u bindevaluator.py \ | |
| -target MHVPSGAQLGLRPDLLARRRLKRCPSRWLCLSAAWSFVQVFSEPDGFTVIFSGLGNNAGGTMHWNDTRPAHFRILKVVLREAVAECLMDSYSLDVHGGRRTAAG \ | |
| -binder YVEICRCVVC \ | |
| -sm /scratch/pranamlab/tong/checkpoints/BindEvaluator/model_path/finetuned_BindEvaluator.ckpt \ | |
| -n_layers 8 \ | |
| -d_model 128 \ | |
| -d_hidden 128 \ | |
| -n_head 8 \ | |
| -d_inner 64 | |
| # -motifs "16, 18, 19, 21, 22, 25, 27, 32, 34, 91, 114, 115, 129, 133, 206, 224, 225, 226, 228, 234, 235" |