Datasets:
Commit
·
3a5bb46
0
Parent(s):
feat: initial dataset release
Browse files- .gitattributes +59 -0
- README.md +110 -0
- dedup/train-00000-of-00001.parquet +3 -0
- original/train-00000-of-00001.parquet +3 -0
.gitattributes
ADDED
|
@@ -0,0 +1,59 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
*.7z filter=lfs diff=lfs merge=lfs -text
|
| 2 |
+
*.arrow filter=lfs diff=lfs merge=lfs -text
|
| 3 |
+
*.bin filter=lfs diff=lfs merge=lfs -text
|
| 4 |
+
*.bz2 filter=lfs diff=lfs merge=lfs -text
|
| 5 |
+
*.ckpt filter=lfs diff=lfs merge=lfs -text
|
| 6 |
+
*.ftz filter=lfs diff=lfs merge=lfs -text
|
| 7 |
+
*.gz filter=lfs diff=lfs merge=lfs -text
|
| 8 |
+
*.h5 filter=lfs diff=lfs merge=lfs -text
|
| 9 |
+
*.joblib filter=lfs diff=lfs merge=lfs -text
|
| 10 |
+
*.lfs.* filter=lfs diff=lfs merge=lfs -text
|
| 11 |
+
*.lz4 filter=lfs diff=lfs merge=lfs -text
|
| 12 |
+
*.mds filter=lfs diff=lfs merge=lfs -text
|
| 13 |
+
*.mlmodel filter=lfs diff=lfs merge=lfs -text
|
| 14 |
+
*.model filter=lfs diff=lfs merge=lfs -text
|
| 15 |
+
*.msgpack filter=lfs diff=lfs merge=lfs -text
|
| 16 |
+
*.npy filter=lfs diff=lfs merge=lfs -text
|
| 17 |
+
*.npz filter=lfs diff=lfs merge=lfs -text
|
| 18 |
+
*.onnx filter=lfs diff=lfs merge=lfs -text
|
| 19 |
+
*.ot filter=lfs diff=lfs merge=lfs -text
|
| 20 |
+
*.parquet filter=lfs diff=lfs merge=lfs -text
|
| 21 |
+
*.pb filter=lfs diff=lfs merge=lfs -text
|
| 22 |
+
*.pickle filter=lfs diff=lfs merge=lfs -text
|
| 23 |
+
*.pkl filter=lfs diff=lfs merge=lfs -text
|
| 24 |
+
*.pt filter=lfs diff=lfs merge=lfs -text
|
| 25 |
+
*.pth filter=lfs diff=lfs merge=lfs -text
|
| 26 |
+
*.rar filter=lfs diff=lfs merge=lfs -text
|
| 27 |
+
*.safetensors filter=lfs diff=lfs merge=lfs -text
|
| 28 |
+
saved_model/**/* filter=lfs diff=lfs merge=lfs -text
|
| 29 |
+
*.tar.* filter=lfs diff=lfs merge=lfs -text
|
| 30 |
+
*.tar filter=lfs diff=lfs merge=lfs -text
|
| 31 |
+
*.tflite filter=lfs diff=lfs merge=lfs -text
|
| 32 |
+
*.tgz filter=lfs diff=lfs merge=lfs -text
|
| 33 |
+
*.wasm filter=lfs diff=lfs merge=lfs -text
|
| 34 |
+
*.xz filter=lfs diff=lfs merge=lfs -text
|
| 35 |
+
*.zip filter=lfs diff=lfs merge=lfs -text
|
| 36 |
+
*.zst filter=lfs diff=lfs merge=lfs -text
|
| 37 |
+
*tfevents* filter=lfs diff=lfs merge=lfs -text
|
| 38 |
+
# Audio files - uncompressed
|
| 39 |
+
*.pcm filter=lfs diff=lfs merge=lfs -text
|
| 40 |
+
*.sam filter=lfs diff=lfs merge=lfs -text
|
| 41 |
+
*.raw filter=lfs diff=lfs merge=lfs -text
|
| 42 |
+
# Audio files - compressed
|
| 43 |
+
*.aac filter=lfs diff=lfs merge=lfs -text
|
| 44 |
+
*.flac filter=lfs diff=lfs merge=lfs -text
|
| 45 |
+
*.mp3 filter=lfs diff=lfs merge=lfs -text
|
| 46 |
+
*.ogg filter=lfs diff=lfs merge=lfs -text
|
| 47 |
+
*.wav filter=lfs diff=lfs merge=lfs -text
|
| 48 |
+
# Image files - uncompressed
|
| 49 |
+
*.bmp filter=lfs diff=lfs merge=lfs -text
|
| 50 |
+
*.gif filter=lfs diff=lfs merge=lfs -text
|
| 51 |
+
*.png filter=lfs diff=lfs merge=lfs -text
|
| 52 |
+
*.tiff filter=lfs diff=lfs merge=lfs -text
|
| 53 |
+
# Image files - compressed
|
| 54 |
+
*.jpg filter=lfs diff=lfs merge=lfs -text
|
| 55 |
+
*.jpeg filter=lfs diff=lfs merge=lfs -text
|
| 56 |
+
*.webp filter=lfs diff=lfs merge=lfs -text
|
| 57 |
+
# Video files - compressed
|
| 58 |
+
*.mp4 filter=lfs diff=lfs merge=lfs -text
|
| 59 |
+
*.webm filter=lfs diff=lfs merge=lfs -text
|
README.md
ADDED
|
@@ -0,0 +1,110 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
dataset_info:
|
| 3 |
+
- config_name: dedup
|
| 4 |
+
features:
|
| 5 |
+
- name: text
|
| 6 |
+
dtype: string
|
| 7 |
+
- name: source
|
| 8 |
+
dtype: string
|
| 9 |
+
splits:
|
| 10 |
+
- name: train
|
| 11 |
+
num_bytes: 85241511
|
| 12 |
+
num_examples: 30844
|
| 13 |
+
download_size: 48607995
|
| 14 |
+
dataset_size: 85241511
|
| 15 |
+
- config_name: original
|
| 16 |
+
features:
|
| 17 |
+
- name: text
|
| 18 |
+
dtype: string
|
| 19 |
+
- name: source
|
| 20 |
+
dtype: string
|
| 21 |
+
splits:
|
| 22 |
+
- name: train
|
| 23 |
+
num_bytes: 105400009
|
| 24 |
+
num_examples: 35996
|
| 25 |
+
download_size: 60150578
|
| 26 |
+
dataset_size: 105400009
|
| 27 |
+
configs:
|
| 28 |
+
- config_name: dedup
|
| 29 |
+
data_files:
|
| 30 |
+
- split: train
|
| 31 |
+
path: dedup/train-*
|
| 32 |
+
- config_name: original
|
| 33 |
+
data_files:
|
| 34 |
+
- split: train
|
| 35 |
+
path: original/train-*
|
| 36 |
+
default: true
|
| 37 |
+
license: mit
|
| 38 |
+
task_categories:
|
| 39 |
+
- text-generation
|
| 40 |
+
- mask-generation
|
| 41 |
+
language:
|
| 42 |
+
- es
|
| 43 |
+
tags:
|
| 44 |
+
- Clinical
|
| 45 |
+
- Spanish
|
| 46 |
+
size_categories:
|
| 47 |
+
- 10K<n<100K
|
| 48 |
+
---
|
| 49 |
+
|
| 50 |
+
# ClinText-SP Dataset Card
|
| 51 |
+
|
| 52 |
+
## Dataset Description
|
| 53 |
+
**ClinText-SP** is the largest publicly available Spanish clinical corpus designed to support research in clinical natural language processing. It aggregates a rich collection of clinical texts from diverse open sources, including medical journals, annotated corpora from shared tasks, and supplementary sources like Wikipedia and medical textbooks.
|
| 54 |
+
|
| 55 |
+
The dataset contains:
|
| 56 |
+
- **35,996 samples** with an average of ~700 tokens per sample
|
| 57 |
+
- **Approximately 25.62M tokens** in total
|
| 58 |
+
|
| 59 |
+
ClinText-SP offers a balanced mix of long, well-structured clinical case reports and shorter, schematic texts, making it ideal for a variety of clinical NLP tasks.
|
| 60 |
+
|
| 61 |
+
## Data Sources
|
| 62 |
+
The corpus is built from three primary source types:
|
| 63 |
+
- **Medical Journals:** Clinical case reports from specialized Spanish-language journals.
|
| 64 |
+
- **Annotated Corpora:** Datasets from shared tasks.
|
| 65 |
+
- **Other Sources:** Additional clinical knowledge extracted from Wikipedia and select medical textbooks to complement the dataset.
|
| 66 |
+
|
| 67 |
+
## Data Preprocessing
|
| 68 |
+
- **Cleaning & Extraction:** Texts were parsed and cleaned from PDFs, HTMLs, and other formats. Extraneous formatting, HTML artifacts, and non-essential metadata (e.g., author names) were removed.
|
| 69 |
+
- **Customized Strategies:** Specific regex-based heuristics and LLM-assisted methods (using Qwen2.5) were employed to accurately extract clinical case information.
|
| 70 |
+
- **Deduplication & Language Filtering:** Fuzzy deduplication (using MinHash) ensured unique entries, and non-Spanish texts were removed using Python Langdetect.
|
| 71 |
+
|
| 72 |
+
## Intended Use
|
| 73 |
+
ClinText-SP is ideal for:
|
| 74 |
+
- **Training and Benchmarking:** Facilitating the development of Spanish clinical NLP models, including encoder-based models such as [RigoBERTa Clinical](https://huggingface.co/IIC/RigoBERTa-Clinical).
|
| 75 |
+
- **Domain-Adaptive Pretraining:** Serving as a robust resource for adapting language models to the clinical domain.
|
| 76 |
+
- **Research and Application:** Advancing clinical language understanding and supporting applications in healthcare AI.
|
| 77 |
+
|
| 78 |
+
## Limitations and Biases
|
| 79 |
+
- **Biases:** The dataset may reflect biases inherent to the selected sources and may not cover every clinical specialty.
|
| 80 |
+
- **Coverage:** While comprehensive, the dataset might not fully encapsulate the entirety of clinical nuances across all medical fields.
|
| 81 |
+
- **Data Quality:** Variations in data quality exist due to the diversity of sources and extraction methods.
|
| 82 |
+
|
| 83 |
+
For more detailed information, please check the [original paper](https://arxiv.org/abs/2503.18594).
|
| 84 |
+
|
| 85 |
+
## Citation
|
| 86 |
+
If you use ClinText-SP in your research, please cite the work as follows:
|
| 87 |
+
|
| 88 |
+
**BibTeX:**
|
| 89 |
+
|
| 90 |
+
```bibtex
|
| 91 |
+
@misc{subies2025clintextsprigobertaclinicalnew,
|
| 92 |
+
title={ClinText-SP and RigoBERTa Clinical: a new set of open resources for Spanish Clinical NLP},
|
| 93 |
+
author={Guillem García Subies and Álvaro Barbero Jiménez and Paloma Martínez Fernández},
|
| 94 |
+
year={2025},
|
| 95 |
+
eprint={2503.18594},
|
| 96 |
+
archivePrefix={arXiv},
|
| 97 |
+
primaryClass={cs.CL},
|
| 98 |
+
url={https://arxiv.org/abs/2503.18594},
|
| 99 |
+
}
|
| 100 |
+
```
|
| 101 |
+
|
| 102 |
+
**APA:**
|
| 103 |
+
|
| 104 |
+
```
|
| 105 |
+
Subies, G. G., Barbero Jiménez, Á., & Martínez Fernández, P. (2025). ClinText-SP and RigoBERTa Clinical: A new set of open resources for Spanish Clinical NLP. arXiv. https://arxiv.org/abs/2503.18594
|
| 106 |
+
```
|
| 107 |
+
|
| 108 |
+
## Model Card Authors and Contact
|
| 109 |
+
|
| 110 |
+
Guillem García Subies: [email protected], [email protected]
|
dedup/train-00000-of-00001.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:fa36b9ac218309fa6bacb062a344fbcbfea1360abac5d29b40f0f8b1866d41a8
|
| 3 |
+
size 48607995
|
original/train-00000-of-00001.parquet
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:ec52e7d8fbbf5149d86d0fff99a36f074ae113a2e0c83fafd8f223cc98143d25
|
| 3 |
+
size 60150578
|