| File , X_max , is_raw, has_raw, raw_X_max, obs_columns , var_columns , Sample_obs_names , Sample_var_names , N_cells, N_genes |
| 10X_PBMC.h5ad , 7.785572528839111, False , True , 8029.0, "Group, cell_type" , "gene_id, gene_name" , "AAACCTGAGAAGGCCT-1, AAACCTGAGACAGACC-1, AAACCTGAGATAGTCA-1, AAACCTGAGCGCCTCA-1, AAACCTGAGGCATGGT-1" , "A1BG, A1BG-AS1, A1CF, A2M, A2M-AS1" , 4340, 33694 |
| Adam.h5ad , 8.33705100563993 , False , True , 4929.0, "cell_ontology_class, cell_ontology_id, cell_type, cell_type1, dataset_name, lifestage, organ, organism, platform" , gene_name , "AAAAACGCTACA, AAAACCAAGTAT, AAAACCCCGCTC, AAAACGACAACC, AAAACTACCTTC" , "0610005C13Rik, 0610007N19Rik, 0610007P14Rik, 0610008F07Rik, 0610009B14Rik" , 3660, 23797 |
| BCs-PCs.h5ad , 8.818692207336426, False , True , 15064.0, "assay, assay_ontology_term_id, cell_type, cell_type_ontology_term_id, development_stage, development_stage_ontology_term_id, disease, disease_ontology_term_id, donor_id, final_annotation, is_primary_data, lineage, observation_joinid, organism, organism_ontology_term_id, self_reported_ethnicity, self_reported_ethnicity_ontology_term_id, sex, sex_ontology_term_id, suspension_type, tissue, tissue_ontology_term_id, tissue_type" , "dispersions, dispersions_norm, feature_biotype, feature_is_filtered, feature_length, feature_name, feature_reference, feature_type, gene_name, highly_variable, mean_counts, means, mt, n_cells, n_cells_by_counts, pct_dropout_by_counts, rb, total_counts" , "AAACCTGAGCCCAATT-1-0, AAACCTGAGGTGATTA-1-0, AAACCTGCAGTCAGAG-1-3, AAACCTGCATGACATC-1-1, AAACCTGCATGGTTGT-1-0" , "ENSMUSG00000000001, ENSMUSG00000000028, ENSMUSG00000000031, ENSMUSG00000000037, ENSMUSG00000000049", 3912, 19283 |
| Baron.h5ad , 8.72524356842041 , False , True , 4318.0, "Group, cell_type" , gene_name , "human1_lib1.final_cell_0001, human1_lib1.final_cell_0002, human1_lib1.final_cell_0003, human1_lib1.final_cell_0004, human1_lib1.final_cell_0005" , "A1BG, A1CF, A2M, A2ML1, A4GALT" , 8569, 20125 |
| Breast_Cancer_Rep1.h5ad , 8.922791481018066, False , True , 167.0, "assay_ontology_term_id, batch, cell_states, cell_type, cell_type_ontology_term_id, dataset_name, development_stage_ontology_term_id, disease_ontology_term_id, donor_id, index, log1p_n_genes_by_counts, log1p_total_counts, log1p_total_counts_hb, log1p_total_counts_mt, log1p_total_counts_ribo, mt_outlier, n_genes, n_genes_by_counts, niche, nnz, organism_ontology_term_id, outlier, pct_counts_hb, pct_counts_in_top_20_genes, pct_counts_mt, pct_counts_ribo, self_reported_ethnicity_ontology_term_id, sex_ontology_term_id, tissue_ontology_term_id, total_counts, total_counts_hb, total_counts_mt, total_counts_ribo" , "biotype, description, ensembl_id, feature_types, gene_ids, gene_name, genome, hb, log1p_mean_counts, log1p_total_counts, mean_counts, mt, n_cells, n_cells_by_counts, ncbi_gene_ids, organism, organism_id, pct_dropout_by_counts, ribo, symbol, synonyms, total_counts, uid" , "000068de-2bd1-4a5d-8cbd-47d3c0cb3c54, 0000e4be-63f5-4834-a1a7-689964bd2921, 0001c59a-e0f0-479c-b9c6-c55e4014c176, 0002d617-9591-48a5-bc12-f87d2b1cc7de, 000306af-221d-4d0f-be12-0885e6c3b810" , "ABCC11, ACTA2, ACTG2, ADAM9, ADGRE5" , 165423, 313 |
| Breast_Cancer_Rep2.h5ad , 9.110367774963379, False , True , 160.0, "assay_ontology_term_id, batch, cell_states, cell_type, cell_type_ontology_term_id, dataset_name, development_stage_ontology_term_id, disease_ontology_term_id, donor_id, index, log1p_n_genes_by_counts, log1p_total_counts, log1p_total_counts_hb, log1p_total_counts_mt, log1p_total_counts_ribo, mt_outlier, n_genes, n_genes_by_counts, niche, nnz, organism_ontology_term_id, outlier, pct_counts_hb, pct_counts_in_top_20_genes, pct_counts_mt, pct_counts_ribo, self_reported_ethnicity_ontology_term_id, sex_ontology_term_id, tissue_ontology_term_id, total_counts, total_counts_hb, total_counts_mt, total_counts_ribo" , "biotype, description, ensembl_id, feature_types, gene_ids, gene_name, genome, hb, log1p_mean_counts, log1p_total_counts, mean_counts, mt, n_cells, n_cells_by_counts, ncbi_gene_ids, organism, organism_id, pct_dropout_by_counts, ribo, symbol, synonyms, total_counts, uid" , "00004327-3d2e-4c22-8f6d-2e91049b1b87, 000092f2-b2b0-4ca7-8982-b0f02fed2a9e, 0000d0ff-54ec-4545-8fac-623ece1edee5, 0000dab1-85ca-471d-9017-b070ece0ba09, 00011dfa-1de7-4c6d-8186-78f3868e30dc" , "ABCC11, ACTA2, ACTG2, ADAM9, ADGRE5" , 118588, 313 |
| CLL_GSE111014.h5ad , 8.417107582092285, False , True , 3630.0, "batch, cell_type, celltype, celltype0, celltype_major, donor" , gene_name , "AAACCTGAGAAGGGTA-scRNA-seq_CLL8_d0, AAACCTGAGAAGGTGA-scRNA-seq_CLL5_d150, AAACCTGAGACCTTTG-scRNA-seq_CLL6_d0, AAACCTGAGACTTGAA-scRNA-seq_CLL5_d30, AAACCTGAGAGACTTA-scRNA-seq_CLL6_d30" , "A1BG, A1BG-AS1, A1CF, A2M, A2M-AS1" , 30106, 33694 |
| COAD.h5ad , 9.210440635681152, False , True , 431.0, "annotation, cell_type, codex_common, high_quality, spatial_cluster" , "feature_types, gene_ids, gene_name, genome" , "aaaacdhd-1, aaaadohm-1, aaaafcno-1, aaaajcph-1, aaaakkkj-1" , "A2ML1, AAMP, AAR2, AARSD1, ABAT" , 405927, 5001 |
| COAD_filtered.h5ad , 8.805025100708008, False , True , 431.0, "annotation, cell_type, codex_common, high_quality, n_genes, spatial_cluster" , "feature_types, gene_ids, gene_name, genome" , "aaaacdhd-1, aaaadohm-1, aaaafcno-1, aaaajcph-1, aaaakkkj-1" , "A2ML1, AAMP, AAR2, AARSD1, ABAT" , 401330, 5001 |
| COAD_grid_niche_1024_256.h5ad , 9.210440635681152, False , True , 14721.0, "annotation, cell_ids, cell_type, codex_common, grid_col, grid_row, high_quality, num_cells, spatial_cluster, x_max, x_min, y_max, y_min" , "feature_types, gene_ids, gene_name, genome" , "grid_0_10_1024_256, grid_0_11_1024_256, grid_0_12_1024_256, grid_0_13_1024_256, grid_0_14_1024_256" , "A2ML1, AAMP, AAR2, AARSD1, ABAT" , 1266, 5001 |
| COAD_grid_niche_1024_256_filtered.h5ad, 8.229777336120605, False , True , 14721.0, "annotation, cell_ids, cell_type, codex_common, grid_col, grid_row, high_quality, n_genes, num_cells, spatial_cluster, x_max, x_min, y_max, y_min" , "feature_types, gene_ids, gene_name, genome" , "grid_0_10_1024_256, grid_0_11_1024_256, grid_0_12_1024_256, grid_0_13_1024_256, grid_0_14_1024_256" , "A2ML1, AAMP, AAR2, AARSD1, ABAT" , 1249, 5001 |
| COAD_grid_niche_256_256.h5ad , 9.210440635681152, False , True , 1500.0, "annotation, cell_ids, cell_type, codex_common, grid_col, grid_row, high_quality, num_cells, spatial_cluster, x_max, x_min, y_max, y_min" , "feature_types, gene_ids, gene_name, genome" , "grid_0_180_256_256, grid_100_100_256_256, grid_100_101_256_256, grid_100_102_256_256, grid_100_103_256_256" , "A2ML1, AAMP, AAR2, AARSD1, ABAT" , 18403, 5001 |
| COAD_grid_niche_256_256_filtered.h5ad , 8.471940040588379, False , True , 1500.0, "annotation, cell_ids, cell_type, codex_common, grid_col, grid_row, high_quality, n_genes, num_cells, spatial_cluster, x_max, x_min, y_max, y_min" , "feature_types, gene_ids, gene_name, genome" , "grid_100_100_256_256, grid_100_101_256_256, grid_100_102_256_256, grid_100_103_256_256, grid_100_104_256_256" , "A2ML1, AAMP, AAR2, AARSD1, ABAT" , 18363, 5001 |
| COVID-19.h5ad , 8.645008087158203, False , True , 8318.0, "batch, cell_type, celltype, sample" , gene_name , "AAACCTGAGAGCTTCT-2, AAACCTGAGAGGTTGC-7, AAACCTGAGATACACA-3, AAACCTGAGCGATTCT-1, AAACCTGAGTTGAGTA-2" , "A1BG, A1CF, A2M, A2M-AS1, A2ML1" , 11931, 17293 |
| Chen.h5ad , 8.713963508605957, False , True , 12908.0, "Ctype, assay, assay_ontology_term_id, cell_type, cell_type_ontology_term_id, development_stage, development_stage_ontology_term_id, disease, disease_ontology_term_id, donor_id, is_primary_data, nCount_RNA, nFeature_RNA, observation_joinid, organism, organism_ontology_term_id, perc.mito, sample, self_reported_ethnicity, self_reported_ethnicity_ontology_term_id, sex, sex_ontology_term_id, suspension_type, tissue, tissue_ontology_term_id, tissue_type" , "ensembl_id, feature_biotype, feature_is_filtered, feature_length, feature_name, feature_reference, feature_type, gene_name" , "1154_AAACCCACACATCATG, 1154_AAACCCACATCATTGG, 1154_AAACCCATCATGAGTC, 1154_AAACGCTAGCATGTTC, 1154_AAACGCTGTGTGTGGA" , "A1BG, A1BG-AS1, A2M, A2M-AS1, A4GALT" , 36313, 20043 |
| Emont.h5ad , 7.729394912719727, False , True , 3175.0, "assay, assay_ontology_term_id, author_cell_type, author_cell_type_subcluster, biosample_id, cell_cycle_g2m_score, cell_cycle_phase, cell_cycle_s_score, cell_type, cell_type_ontology_term_id, development_stage, development_stage_ontology_term_id, diet_schedule, diet_type, disease, disease_ontology_term_id, donor_id, is_primary_data, mitochondrial_percent, mouse_strain_label, n_genes, n_umis, observation_joinid, organism, organism_ontology_term_id, organism_weight, organism_weight_unit, ribosomal_protein_percent, sct_n_genes, sct_n_umis, self_reported_ethnicity, self_reported_ethnicity_ontology_term_id, sex, sex_ontology_term_id, spliced_percent, splicing_ratio, suspension_type, tissue, tissue_ontology_term_id, tissue_type, unspliced_percent" , "ensembl_version, feature_biotype, feature_is_filtered, feature_length, feature_name, feature_reference, feature_type, gene_name" , "Mm_EPI_10-1_AAAGGATCACTTACAG, Mm_EPI_10-1_AACACACGTTGTGTTG, Mm_EPI_10-1_AACCAACGTGTCCATA, Mm_EPI_10-1_AACCTGACAGAGCCCT, Mm_EPI_10-1_AATGCCAAGTCGAAAT" , "ENSMUSG00000000001, ENSMUSG00000000003, ENSMUSG00000000028, ENSMUSG00000000031, ENSMUSG00000000037", 7632, 24811 |
| Endothelium.h5ad , 8.558984756469727, False , True , 14925.0, "G2M_score, S_score, assay, assay_ontology_term_id, batch, cell_type, cell_type_ontology_term_id, chemistry, development_stage, development_stage_ontology_term_id, disease, disease_ontology_term_id, dissection, donor_id, is_primary_data, leiden, n_counts, n_genes, new_celltype, observation_joinid, organism, organism_ontology_term_id, percent_mito, phase, self_reported_ethnicity, self_reported_ethnicity_ontology_term_id, sex, sex_ontology_term_id, suspension_type, tissue, tissue_ontology_term_id, tissue_type" , "dispersions, dispersions_norm, ensembl_id, feature_biotype, feature_is_filtered, feature_length, feature_name, feature_reference, feature_type, gene_name, gene_symbols, means, n_cells" , "AAACCTGAGAATTCCC-WSSS_F_LNG8713179, AAACCTGAGAGGACGG-WSSS_F_LNG8713178, AAACCTGAGGAATGGA-WSSS_F_LNG8713178, AAACCTGCAATCACAC-WSSS_F_LNG8713184, AAACCTGCAATGGTCT-5891STDY8062356" , "A1BG, A1BG-AS1, A2M, A2M-AS1, A2ML1-AS1" , 5467, 20707 |
| Global.h5ad , 8.818692207336426, False , True , 15064.0, "assay, assay_ontology_term_id, cell_type, cell_type_ontology_term_id, development_stage, development_stage_ontology_term_id, disease, disease_ontology_term_id, donor_id, final_annotation, is_primary_data, lineage, observation_joinid, organism, organism_ontology_term_id, self_reported_ethnicity, self_reported_ethnicity_ontology_term_id, sex, sex_ontology_term_id, suspension_type, tag, tissue, tissue_ontology_term_id, tissue_type" , "dispersions, dispersions_norm, feature_biotype, feature_is_filtered, feature_length, feature_name, feature_reference, feature_type, gene_name, highly_variable, mean_counts, means, mt, n_cells, n_cells_by_counts, pct_dropout_by_counts, rb, total_counts" , "AAACCTGAGACTGTAA-1-3, AAACCTGAGAGTGACC-1-3, AAACCTGAGCAGGTCA-1-1, AAACCTGAGCCCAATT-1-0, AAACCTGAGCGTTGCC-1-0" , "ENSMUSG00000000001, ENSMUSG00000000028, ENSMUSG00000000031, ENSMUSG00000000037, ENSMUSG00000000049", 10831, 19283 |
| HCC.h5ad , 9.210440635681152, False , True , 406.0, "annotation, cell_type, codex_common, high_quality, spatial_cluster" , "feature_types, gene_ids, gene_name, genome" , "aaaabkfh-1, aaaapcjn-1, aaablecg-1, aaablhmb-1, aaabmfjk-1" , "A2ML1, AAMP, AAR2, AARSD1, ABAT" , 271687, 5001 |
| HCC_filtered.h5ad , 8.255088806152344, False , True , 406.0, "annotation, cell_type, codex_common, high_quality, n_genes, spatial_cluster" , "feature_types, gene_ids, gene_name, genome" , "aaaabkfh-1, aaaapcjn-1, aaablecg-1, aaablhmb-1, aaabmfjk-1" , "A2ML1, AAMP, AAR2, AARSD1, ABAT" , 271547, 5001 |
| HCC_grid_niche_1024_256.h5ad , 9.210440635681152, False , True , 10128.0, "annotation, cell_ids, cell_type, codex_common, grid_col, grid_row, high_quality, num_cells, spatial_cluster, x_max, x_min, y_max, y_min" , "feature_types, gene_ids, gene_name, genome" , "grid_0_1_1024_256, grid_0_5_1024_256, grid_10_10_1024_256, grid_10_11_1024_256, grid_10_12_1024_256" , "A2ML1, AAMP, AAR2, AARSD1, ABAT" , 1408, 5001 |
| HCC_grid_niche_1024_256_filtered.h5ad , 7.265130043029785, False , True , 10128.0, "annotation, cell_ids, cell_type, codex_common, grid_col, grid_row, high_quality, n_genes, num_cells, spatial_cluster, x_max, x_min, y_max, y_min" , "feature_types, gene_ids, gene_name, genome" , "grid_10_10_1024_256, grid_10_11_1024_256, grid_10_12_1024_256, grid_10_13_1024_256, grid_10_14_1024_256" , "A2ML1, AAMP, AAR2, AARSD1, ABAT" , 1394, 5001 |
| HCC_grid_niche_256_256.h5ad , 9.210440635681152, False , True , 1413.0, "annotation, cell_ids, cell_type, codex_common, grid_col, grid_row, high_quality, num_cells, spatial_cluster, x_max, x_min, y_max, y_min" , "feature_types, gene_ids, gene_name, genome" , "grid_100_100_256_256, grid_100_101_256_256, grid_100_102_256_256, grid_100_103_256_256, grid_100_104_256_256" , "A2ML1, AAMP, AAR2, AARSD1, ABAT" , 20759, 5001 |
| HCC_grid_niche_256_256_filtered.h5ad , 7.419180870056152, False , True , 1413.0, "annotation, cell_ids, cell_type, codex_common, grid_col, grid_row, high_quality, n_genes, num_cells, spatial_cluster, x_max, x_min, y_max, y_min" , "feature_types, gene_ids, gene_name, genome" , "grid_100_100_256_256, grid_100_101_256_256, grid_100_102_256_256, grid_100_103_256_256, grid_100_104_256_256" , "A2ML1, AAMP, AAR2, AARSD1, ABAT" , 20732, 5001 |
| HTAPP-213-SMP-6752.h5ad , 8.899078369140625, False , True , 2579.0, "Phase, assay, assay_ontology_term_id, cell_type, cell_type_ontology_term_id, cnv_pass_mal, compartments, condition, development_stage, development_stage_ontology_term_id, disease, disease_ontology_term_id, donor_id, is_primary_data, labels_cl_unif, labels_cl_unif2_broad, labels_unif, leiden, n_counts, n_genes, n_genes_by_counts, observation_joinid, organism, organism_ontology_term_id, pct_counts_mt, replicate, self_reported_ethnicity, self_reported_ethnicity_ontology_term_id, sex, sex_ontology_term_id, suspension_type, tissue, tissue_ontology_term_id, tissue_type, total_counts, total_counts_mt" , "ensembl_id, feature_biotype, feature_is_filtered, feature_length, feature_name, feature_reference, feature_type, gene_name, highly_variable, highly_variable_nbatches, highly_variable_rank, mean_counts, means, mt, n_cells, n_cells_by_counts, pct_dropout_by_counts, total_counts, variances, variances_norm", "HTAPP-213-SMP-6752-TST-channel1_AAACCCAAGGTGCGAT-1, HTAPP-213-SMP-6752-TST-channel1_AAACCCAAGTACCGGA-1, HTAPP-213-SMP-6752-TST-channel1_AAACCCACAATCTCGA-1, HTAPP-213-SMP-6752-TST-channel1_AAACCCAGTCAAGCGA-1, HTAPP-213-SMP-6752-TST-channel1_AAACCCAGTCATGCAT-1" , "A1BG, A1BG-AS1, A1CF, A2M, A2M-AS1" , 9799, 24855 |
| HTAPP-313-SMP-932.h5ad , 9.17424488067627 , False , True , 9258.0, "Phase, assay, assay_ontology_term_id, cell_type, cell_type_ontology_term_id, cnv_pass_mal, compartments, condition, development_stage, development_stage_ontology_term_id, disease, disease_ontology_term_id, donor_id, is_primary_data, labels_cl_unif, labels_cl_unif2_broad, labels_unif, leiden, n_counts, n_genes, n_genes_by_counts, observation_joinid, organism, organism_ontology_term_id, pct_counts_mt, replicate, self_reported_ethnicity, self_reported_ethnicity_ontology_term_id, sex, sex_ontology_term_id, suspension_type, tissue, tissue_ontology_term_id, tissue_type, total_counts, total_counts_mt" , "ensembl_id, feature_biotype, feature_is_filtered, feature_length, feature_name, feature_reference, feature_type, gene_name, highly_variable, highly_variable_nbatches, highly_variable_rank, mean_counts, means, mt, n_cells, n_cells_by_counts, pct_dropout_by_counts, total_counts, variances, variances_norm", "HTAPP-313-SMP-932-fresh-channel1_AAACCCAAGATGCGAC-1, HTAPP-313-SMP-932-fresh-channel1_AAACCCAAGCACACAG-1, HTAPP-313-SMP-932-fresh-channel1_AAACCCAGTATGGTAA-1, HTAPP-313-SMP-932-fresh-channel1_AAACCCAGTGGATACG-1, HTAPP-313-SMP-932-fresh-channel1_AAACCCAGTTATCCAG-1" , "A1BG, A1BG-AS1, A1CF, A2M, A2M-AS1" , 12494, 20938 |
| HTAPP-783-SMP-4081.h5ad , 9.062728881835938, False , True , 9504.0, "Phase, assay, assay_ontology_term_id, cell_type, cell_type_ontology_term_id, cnv_pass_mal, compartments, condition, development_stage, development_stage_ontology_term_id, disease, disease_ontology_term_id, donor_id, is_primary_data, labels_cl_unif, labels_cl_unif2_broad, labels_unif, leiden, n_counts, n_genes, n_genes_by_counts, observation_joinid, organism, organism_ontology_term_id, pct_counts_mt, replicate, self_reported_ethnicity, self_reported_ethnicity_ontology_term_id, sex, sex_ontology_term_id, suspension_type, tissue, tissue_ontology_term_id, tissue_type, total_counts, total_counts_mt" , "ensembl_id, feature_biotype, feature_is_filtered, feature_length, feature_name, feature_reference, feature_type, gene_name, highly_variable, highly_variable_nbatches, highly_variable_rank, mean_counts, means, mt, n_cells, n_cells_by_counts, pct_dropout_by_counts, total_counts, variances, variances_norm", "HTAPP-783-SMP-4081-fresh-channel1_AAACCTGGTCGAAAGC-1, HTAPP-783-SMP-4081-fresh-channel1_AAACGGGCAGATGAGC-1, HTAPP-783-SMP-4081-fresh-channel1_AAACGGGCATAACCTG-1, HTAPP-783-SMP-4081-fresh-channel1_AAACGGGTCTACCAGA-1, HTAPP-783-SMP-4081-fresh-channel1_AAACGGGTCTCCCTGA-1", "A1BG, A1BG-AS1, A2M, A2M-AS1, A4GALT" , 2276, 16853 |
| HTAPP-878-SMP-7149.h5ad , 9.063279151916504, False , True , 5465.0, "Phase, assay, assay_ontology_term_id, cell_type, cell_type_ontology_term_id, cnv_pass_mal, compartments, condition, development_stage, development_stage_ontology_term_id, disease, disease_ontology_term_id, donor_id, is_primary_data, labels_cl_unif, labels_cl_unif2_broad, labels_unif, leiden, n_counts, n_genes, n_genes_by_counts, observation_joinid, organism, organism_ontology_term_id, pct_counts_mt, replicate, self_reported_ethnicity, self_reported_ethnicity_ontology_term_id, sex, sex_ontology_term_id, suspension_type, tissue, tissue_ontology_term_id, tissue_type, total_counts, total_counts_mt" , "ensembl_id, feature_biotype, feature_is_filtered, feature_length, feature_name, feature_reference, feature_type, gene_name, highly_variable, highly_variable_nbatches, highly_variable_rank, mean_counts, means, mt, n_cells, n_cells_by_counts, pct_dropout_by_counts, total_counts, variances, variances_norm", "HTAPP-878-SMP-7149-TST-channel1_AAACCCAAGTAGTCTC-1, HTAPP-878-SMP-7149-TST-channel1_AAACCCAAGTGTCATC-1, HTAPP-878-SMP-7149-TST-channel1_AAACCCACAGACAAGC-1, HTAPP-878-SMP-7149-TST-channel1_AAACCCATCTGCGATA-1, HTAPP-878-SMP-7149-TST-channel1_AAACGAACAATACAGA-1" , "A1BG, A1BG-AS1, A1CF, A2M, A2M-AS1" , 10623, 25345 |
| Infant.h5ad , 7.315526485443115, False , True , 1063.0, "age, assay, assay_ontology_term_id, cell_type, cell_type_ontology_term_id, cluster_id, cluster_name, development_stage, development_stage_ontology_term_id, disease, disease_ontology_term_id, donor_id, is_primary_data, lobe, nCount_RNA, nFeature_RNA, observation_joinid, organism, organism_ontology_term_id, orig.ident, self_reported_ethnicity, self_reported_ethnicity_ontology_term_id, sex, sex_ontology_term_id, suspension_type, tissue, tissue_ontology_term_id, tissue_type" , "ensembl_id, feature_biotype, feature_is_filtered, feature_length, feature_name, feature_reference, feature_type, gene_name, name" , "BA10_PFC_AAAAACGGATCC, BA10_PFC_AAAAAGATTCCT, BA10_PFC_AAAAATAACAGA, BA10_PFC_AAAACACCAGTC, BA10_PFC_AAAACCTAGATA" , "7SK_ENSG00000202198, A1BG, A1BG-AS1, A1CF, A2M" , 51878, 24532 |
| Muto.h5ad , 6.2766432762146 , False , True , 2491.0, "assay, assay_ontology_term_id, author_cell_type, cell_type, cell_type_ontology_term_id, development_stage, development_stage_ontology_term_id, disease, disease_ontology_term_id, donor_id, is_primary_data, library_uuid, mapped_reference_annotation, nCount_SCT, nFeature_SCT, observation_joinid, organism, organism_ontology_term_id, percent.mt, percent.rpl, percent.rps, reported_diseases, sample_preservation_method, sample_uuid, self_reported_ethnicity, self_reported_ethnicity_ontology_term_id, seurat_clusters, sex, sex_ontology_term_id, suspension_type, suspension_uuid, tissue, tissue_ontology_term_id, tissue_type" , "ensembl_id, feature_biotype, feature_is_filtered, feature_length, feature_name, feature_reference, feature_type, gene_name" , "AAACCTGAGACCGGAT-4, AAACCTGAGAGGTTGC-4, AAACCTGAGCCCTAAT-2, AAACCTGAGGACATTA-5, AAACCTGAGGCGATAC-3" , "A1BG, A1BG-AS1, A1CF, A2M, A2M-AS1" , 19985, 33145 |
| OV.h5ad , 9.210440635681152, False , True , 310.0, "annotation, cell_type, codex_common, high_quality, spatial_cluster" , "feature_types, gene_ids, gene_name, genome" , "aaaadpgk-1, aaaafcja-1, aaaahekl-1, aaaajack-1, aaaalnbf-1" , "A2ML1, AAMP, AAR2, AARSD1, ABAT" , 410193, 5001 |
| OV_filtered.h5ad , 8.699681282043457, False , True , 310.0, "annotation, cell_type, codex_common, high_quality, n_genes, spatial_cluster" , "feature_types, gene_ids, gene_name, genome" , "aaaadpgk-1, aaaafcja-1, aaaahekl-1, aaaajack-1, aaaalnbf-1" , "A2ML1, AAMP, AAR2, AARSD1, ABAT" , 409304, 5001 |
| OV_grid_niche_1024_256.h5ad , 9.210440635681152, False , True , 10815.0, "annotation, cell_ids, cell_type, codex_common, grid_col, grid_row, high_quality, num_cells, spatial_cluster, x_max, x_min, y_max, y_min" , "feature_types, gene_ids, gene_name, genome" , "grid_0_11_1024_256, grid_0_4_1024_256, grid_0_5_1024_256, grid_0_6_1024_256, grid_10_10_1024_256" , "A2ML1, AAMP, AAR2, AARSD1, ABAT" , 1429, 5001 |
| OV_grid_niche_1024_256_filtered.h5ad , 7.824445724487305, False , True , 10815.0, "annotation, cell_ids, cell_type, codex_common, grid_col, grid_row, high_quality, n_genes, num_cells, spatial_cluster, x_max, x_min, y_max, y_min" , "feature_types, gene_ids, gene_name, genome" , "grid_0_11_1024_256, grid_0_4_1024_256, grid_0_5_1024_256, grid_0_6_1024_256, grid_10_10_1024_256" , "A2ML1, AAMP, AAR2, AARSD1, ABAT" , 1417, 5001 |
| OV_grid_niche_256_256.h5ad , 9.210440635681152, False , True , 1262.0, "annotation, cell_ids, cell_type, codex_common, grid_col, grid_row, high_quality, num_cells, spatial_cluster, x_max, x_min, y_max, y_min" , "feature_types, gene_ids, gene_name, genome" , "grid_0_20_256_256, grid_0_21_256_256, grid_100_100_256_256, grid_100_101_256_256, grid_100_102_256_256" , "A2ML1, AAMP, AAR2, AARSD1, ABAT" , 20925, 5001 |
| OV_grid_niche_256_256_filtered.h5ad , 8.112028121948242, False , True , 1262.0, "annotation, cell_ids, cell_type, codex_common, grid_col, grid_row, high_quality, n_genes, num_cells, spatial_cluster, x_max, x_min, y_max, y_min" , "feature_types, gene_ids, gene_name, genome" , "grid_0_20_256_256, grid_0_21_256_256, grid_100_100_256_256, grid_100_101_256_256, grid_100_102_256_256" , "A2ML1, AAMP, AAR2, AARSD1, ABAT" , 20897, 5001 |
| Quake_Smart-seq2_Diaphragm.h5ad , 9.172419607823935, False , True , 208892.0, "cell_ontology_class, cell_ontology_id, cell_type, cell_type1, channel, cluster, dataset_name, donor, free_annotation, gender, organ, organism, platform, region" , gene_name , "A1.B002762.3_39_F.1.1, A1.D042105.3_11_M.1.1, A10.B002762.3_39_F.1.1, A10.D042105.3_11_M.1.1, A11.B002762.3_39_F.1.1" , "0610005C13Rik, 0610007C21Rik, 0610007L01Rik, 0610007N19Rik, 0610007P08Rik" , 870, 23341 |
| Quake_Smart-seq2_Limb_Muscle.h5ad , 9.153035282285586, False , True , 1242300.0, "cell_ontology_class, cell_ontology_id, cell_type, cell_type1, channel, cluster, dataset_name, donor, free_annotation, gender, organ, organism, platform, region" , gene_name , "A1.B002765.3_38_F.1.1, A1.D042103.3_11_M.1, A1.D042186.3_8_M.1.1, A10.B002765.3_38_F.1.1, A10.B002769.3_39_F.1.1" , "0610005C13Rik, 0610007C21Rik, 0610007L01Rik, 0610007N19Rik, 0610007P08Rik" , 1090, 23341 |
| Quake_Smart-seq2_Lung.h5ad , 8.47625750332998 , False , True , 822470.0, "cell_ontology_class, cell_ontology_id, cell_type, cell_type1, channel, cluster, dataset_name, donor, free_annotation, gender, organ, organism, platform, region" , gene_name , "A1.MAA000526.3_9_M.1.1, A1.MAA000530.3_8_M.1.1, A1.MAA001847.3_39_F.1.1, A1.MAA001889.3_38_F.1.1, A1.MAA001892.3_38_F.1.1" , "0610005C13Rik, 0610007C21Rik, 0610007L01Rik, 0610007N19Rik, 0610007P08Rik" , 1676, 23341 |
| Quake_Smart-seq2_Trachea.h5ad , 9.189816327366522, False , True , 678254.0, "cell_ontology_class, cell_ontology_id, cell_type, cell_type1, channel, cluster, dataset_name, donor, free_annotation, gender, organ, organism, platform, region" , gene_name , "A1.D042475.3_9_M.1.1, A1.MAA000496.3_10_M.1.1, A1.MAA001865.3_38_F.1.1, A1.MAA001867.3_39_F.1.1, A10.D042474.3_8_M.1.1" , "0610005C13Rik, 0610007C21Rik, 0610007L01Rik, 0610007N19Rik, 0610007P08Rik" , 1350, 23341 |
| Shekhar.h5ad , 7.725038051605225, False , True , 707.0, "Group, cell_type" , gene_name , "Bipolar1_AAAAAGTCTGGT, Bipolar1_AAAACGTCAGGC, Bipolar1_AAAACTCCGTGG, Bipolar1_AAAAGAGCTACG, Bipolar1_AAAAGTACTGGG" , "0610007P14Rik, 0610009B22Rik, 0610009E02Rik, 0610009L18Rik, 0610009O20Rik" , 27499, 13166 |
| Zeisel.h5ad , 8.410861015319824, False , True , 10738.0, "Group, Group2, cell_type" , gene_name , "1772058148_A01, 1772058148_A03, 1772058148_A04, 1772058148_A05, 1772058148_A06" , "0610005C13Rik, 0610007N19Rik, 0610007P14Rik, 0610009B22Rik, 0610009D07Rik" , 3005, 19972 |
| c_data.h5ad , 6.781282424926758, False , False , , "Factor Value Ontology Term[disease], Factor Value Ontology Term[inferred cell type - authors labels], Factor Value Ontology Term[inferred cell type - ontology labels], Factor Value Ontology Term[sampling site], Factor Value[disease], Factor Value[inferred cell type - authors labels], Factor Value[inferred cell type - ontology labels], Factor Value[sampling site], Sample Characteristic Ontology Term[age], Sample Characteristic Ontology Term[cause of death], Sample Characteristic Ontology Term[clinical history], Sample Characteristic Ontology Term[developmental stage], Sample Characteristic Ontology Term[disease], Sample Characteristic Ontology Term[individual], Sample Characteristic Ontology Term[organism part], Sample Characteristic Ontology Term[organism status], Sample Characteristic Ontology Term[organism], Sample Characteristic Ontology Term[sampling site], Sample Characteristic Ontology Term[sex], Sample Characteristic[age], Sample Characteristic[cause of death], Sample Characteristic[clinical history], Sample Characteristic[developmental stage], Sample Characteristic[disease], Sample Characteristic[individual], Sample Characteristic[organism part], Sample Characteristic[organism status], Sample Characteristic[organism], Sample Characteristic[sampling site], Sample Characteristic[sex], celltype, str_batch", "gene_name, highly_variable, highly_variable_rank, index_column, means, variances, variances_norm" , "SRR9123032-AACACGTAGCGTAATA, SRR9123032-AACCATGAGAAACGAG, SRR9123032-AACCGCGAGGCCATAG, SRR9123032-AACTCCCGTGTGACCC, SRR9123032-AACTTTCCAGCTCGAC" , "A2M, AAMDC, ABCA8, ABCB1, ABCB4" , 7844, 3000 |
| filtered_ms_adata.h5ad , 7.28958797454834 , False , False , , "Factor Value Ontology Term[disease], Factor Value Ontology Term[inferred cell type - authors labels], Factor Value Ontology Term[inferred cell type - ontology labels], Factor Value Ontology Term[sampling site], Factor Value[disease], Factor Value[inferred cell type - authors labels], Factor Value[inferred cell type - ontology labels], Factor Value[sampling site], Sample Characteristic Ontology Term[age], Sample Characteristic Ontology Term[cause of death], Sample Characteristic Ontology Term[clinical history], Sample Characteristic Ontology Term[developmental stage], Sample Characteristic Ontology Term[disease], Sample Characteristic Ontology Term[individual], Sample Characteristic Ontology Term[organism part], Sample Characteristic Ontology Term[organism status], Sample Characteristic Ontology Term[organism], Sample Characteristic Ontology Term[sampling site], Sample Characteristic Ontology Term[sex], Sample Characteristic[age], Sample Characteristic[cause of death], Sample Characteristic[clinical history], Sample Characteristic[developmental stage], Sample Characteristic[disease], Sample Characteristic[individual], Sample Characteristic[organism part], Sample Characteristic[organism status], Sample Characteristic[organism], Sample Characteristic[sampling site], Sample Characteristic[sex], celltype, str_batch", "gene_name, index_column" , "SRR9123033-AAACCTGAGCTAGCCC, SRR9123033-AAACCTGCAGACGCCT, SRR9123033-AAAGATGGTAGCGTAG, SRR9123033-AAAGATGGTGCCTGGT, SRR9123033-AAAGTAGCACCAGGTC" , "ENSG00000000971, ENSG00000002330, ENSG00000002549, ENSG00000002586, ENSG00000002745" , 13468, 3000 |
| gse155468.h5ad , 66644.0 , True , False , , "celltype, celltype2, integrated_snn_res.0.6, nCount_RNA, nFeature_RNA, orig.ident, seurat_clusters, stim" , , "AAACCCAAGACCCTTA.1, AAACCCAAGAGAGCCT.1, AAACCCAAGCACAAAT.1, AAACCCAAGCCACAAG.1, AAACCCAAGCGGACAT.1" , "A2M, A2M-AS1, AAAS, AACS, AAED1" , 48082, 12382 |
| gse155468_filtered.h5ad , 8.982404696376499, False , True , 66644.0, "cell_type, celltype, celltype2, integrated_snn_res.0.6, nCount_RNA, nFeature_RNA, n_genes, orig.ident, seurat_clusters, stim" , gene_name , "AAACCCAAGACCCTTA.1, AAACCCAAGAGAGCCT.1, AAACCCAAGCACAAAT.1, AAACCCAAGCCACAAG.1, AAACCCAAGCGGACAT.1" , "A2M, A2M-AS1, AAAS, AACS, AAED1" , 48082, 12382 |
| mascosko.h5ad , 8.206678985796787, False , True , 671.0, "cell_type, celltype, clust_id" , gene_name , "p1_AAAAAAACAGTC, p1_AAAAAAATGGTA, p1_AAAAACTCTTAG, p1_AAAAAGTCGGCT, p1_AAAAATTTGTTC" , "0610005C13Rik, 0610007P14Rik, 0610009B22Rik, 0610009E02Rik, 0610009L18Rik" , 44808, 23288 |
| mouse_es.h5ad , 7.305623396665893, False , True , 2309.0, "cell_type, celltype" , gene_name , "Cell_1, Cell_10, Cell_100, Cell_1000, Cell_1001" , "0610005C13Rik, 0610007P14Rik, 0610009B22Rik, 0610009L18Rik, 0610009O20Rik" , 2717, 24175 |
| pancreas.h5ad , 8.646111488342285, False , True , 4318.0, "cell_type, celltype, n_counts, size_factors, tech" , "gene_name, n_cells" , "human1_lib1.final_cell_0001, human1_lib1.final_cell_0002, human1_lib1.final_cell_0003, human1_lib1.final_cell_0004, human1_lib1.final_cell_0005" , "A1BG, A1CF, A2M, A4GALT, AAAS" , 1937, 15575 |
| worm_neuron.h5ad , 7.578424438387428, False , True , 219.0, "Cluster, Size_Factor, cell_type, celltype, delta, halo, n.umi, neuron.type, num_genes_expressed, peaks, plate, rho, tissue, tsne_1, tsne_2" , gene_name , "cele-001-001.AACTACGGCT, cele-001-001.AGCTGCAATA, cele-001-001.CCTACGGCAA, cele-001-001.CGCTAACCGT, cele-001-001.CTGATCGACC" , "WBGene00000001, WBGene00000002, WBGene00000003, WBGene00000004, WBGene00000005" , 4186, 20271 |
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