mirror-fish / config_mirror-fish.yaml
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data:
image_resize_dims:
height: 256
width: 256
data_dir: ${LP_ROOT_PATH:}/data/mirror-mouse-fused
video_dir: ${data.data_dir}/videos
csv_file: CollectedData.csv
num_keypoints: 51
keypoint_names:
- chin_tip_main
- chin3_4_main
- chin_half_main
- chin1_4_main
- chin_base_main
- head_main
- mid_main
- tail_neck_main
- caudal_v_main
- caudal_d_main
- pectoral_L_base_main
- pectoral_L_main
- pectoral_R_base_main
- pectoral_R_main
- dorsal_main
- anal_main
- fork_main
- chin_tip_top
- chin3_4_top
- chin_half_top
- chin1_4_top
- chin_base_top
- head_top
- mid_top
- tail_neck_top
- caudal_v_top
- caudal_d_top
- pectoral_L_base_top
- pectoral_L_top
- pectoral_R_base_top
- pectoral_R_top
- dorsal_top
- anal_top
- fork_top
- chin_tip_right
- chin3_4_right
- chin_half_right
- chin1_4_right
- chin_base_right
- head_right
- mid_right
- tail_neck_right
- caudal_v_right
- caudal_d_right
- pectoral_L_base_right
- pectoral_L_right
- pectoral_R_base_right
- pectoral_R_right
- dorsal_right
- anal_right
- fork_right
mirrored_column_matches:
- [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16]
- [17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33]
- [34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50]
# all labels in multiple views w/ <25 nans
columns_for_singleview_pca:
[4, 5, 6, 7, 8, 9, 14, 15, 16, 22, 23, 24, 38, 39, 40, 41, 42, 43, 48, 50]
training:
imgaug: dlc
train_batch_size: 8
val_batch_size: 32
test_batch_size: 32
train_prob: 0.95
val_prob: 0.05
train_frames: 1
num_gpus: 1
unfreezing_epoch: 20
min_epochs: 300
max_epochs: 300
log_every_n_steps: 10
check_val_every_n_epoch: 5
rng_seed_data_pt: 0
rng_seed_model_pt: 0
optimizer: Adam
optimizer_params:
learning_rate: 1e-3
lr_scheduler: multisteplr
lr_scheduler_params:
multisteplr:
milestones: [150, 200, 250]
gamma: 0.5
model:
losses_to_use: []
backbone: resnet50_animal_ap10k
model_type: heatmap
heatmap_loss_type: mse
model_name: test_model
dali:
general:
seed: 123456
base:
train:
sequence_length: 32
predict:
sequence_length: 64
context:
train:
batch_size: 16
predict:
sequence_length: 64
losses:
pca_multiview:
log_weight: 10.7
components_to_keep: 3
epsilon: null
pca_singleview:
log_weight: 10.7
components_to_keep: 0.99
epsilon: null
temporal:
log_weight: 10.7
epsilon: 10.0
prob_threshold: 0.05
eval:
predict_vids_after_training: false
save_vids_after_training: false
test_videos_directory: ${data.video_dir}
confidence_thresh_for_vid: 0.90
callbacks:
anneal_weight:
attr_name: total_unsupervised_importance
init_val: 0.0
increase_factor: 0.01
final_val: 1.0
freeze_until_epoch: 60