Instructions to use tdc/Geneformer with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use tdc/Geneformer with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="tdc/Geneformer")# Load model directly from transformers import AutoTokenizer, AutoModelForMaskedLM tokenizer = AutoTokenizer.from_pretrained("tdc/Geneformer") model = AutoModelForMaskedLM.from_pretrained("tdc/Geneformer", device_map="auto") - Notebooks
- Google Colab
- Kaggle
| include geneformer/gene_name_id_dict_gc95M.pkl | |
| include geneformer/ensembl_mapping_dict_gc95M.pkl | |
| include geneformer/token_dictionary_gc95M.pkl | |