SNS Paper - Flashzoi Silicus (fine-tuned)
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mm10-trained Flashzoi fine-tuned on synthetic genomes (Casimov et al., Fig 5C, S7-S8). • 10 items • Updated
Flashzoi fine-tuned on silicusPlusCGDCreCtcfExonTE
mm10-trained Flashzoi (rf524k) fine-tuned on the silicusPlusCGDCreCtcfExonTE synthetic genome with CUT&Tag H3K27me3 and H3K4me3 targets.
- Genome: Silicus + CGD + CRE + CTCF + Exon + TE (telescope step 5, full)
- Base model: Flashzoi rf524k trained on mm10
- Receptive field: 524 kb
- Resolution: 32 bp
- Paper: Casimov, Lifshitz et al., "Reverse engineering the genomic encodings of the pluripotent epigenome"
See the paper companion repository for full code and configs.
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